Distinct transcriptome profiles reveal gene expression patterns during fruit development and maturation in five main cultivated species of pear (Pyrus L.)
Identifieur interne : 000249 ( Main/Exploration ); précédent : 000248; suivant : 000250Distinct transcriptome profiles reveal gene expression patterns during fruit development and maturation in five main cultivated species of pear (Pyrus L.)
Auteurs : Ming-Yue Zhang [République populaire de Chine] ; Cheng Xue [République populaire de Chine] ; Linlin Xu [République populaire de Chine] ; Honghe Sun [République populaire de Chine] ; Meng-Fan Qin [République populaire de Chine] ; Shaoling Zhang [République populaire de Chine] ; Jun Wu [République populaire de Chine]Source :
- Scientific Reports [ 2045-2322 ] ; 2016.
Abstract
The transcriptomes of five pear cultivars, ‘Hosui’ (
Url:
DOI: 10.1038/srep28130
PubMed: 27305967
PubMed Central: 4910100
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Distinct transcriptome profiles reveal gene expression patterns during fruit development and maturation in five main cultivated species of pear (<italic>Pyrus L.</italic>)</title><author><name sortKey="Zhang, Ming Yue" sort="Zhang, Ming Yue" uniqKey="Zhang M" first="Ming-Yue" last="Zhang">Ming-Yue Zhang</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>Centre of Pear Engineering Technology Research, State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University</institution>, Nanjing 210095,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Xue, Cheng" sort="Xue, Cheng" uniqKey="Xue C" first="Cheng" last="Xue">Cheng Xue</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>Centre of Pear Engineering Technology Research, State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University</institution>, Nanjing 210095,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Xu, Linlin" sort="Xu, Linlin" uniqKey="Xu L" first="Linlin" last="Xu">Linlin Xu</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>Centre of Pear Engineering Technology Research, State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University</institution>, Nanjing 210095,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Sun, Honghe" sort="Sun, Honghe" uniqKey="Sun H" first="Honghe" last="Sun">Honghe Sun</name><affiliation wicri:level="1"><nlm:aff id="a2"><institution>Beijing Academy of Agriculture and Forestry Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (North China)</institution>, Beijing, 100097,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Qin, Meng Fan" sort="Qin, Meng Fan" uniqKey="Qin M" first="Meng-Fan" last="Qin">Meng-Fan Qin</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>Centre of Pear Engineering Technology Research, State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University</institution>, Nanjing 210095,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Zhang, Shaoling" sort="Zhang, Shaoling" uniqKey="Zhang S" first="Shaoling" last="Zhang">Shaoling Zhang</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>Centre of Pear Engineering Technology Research, State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University</institution>, Nanjing 210095,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Wu, Jun" sort="Wu, Jun" uniqKey="Wu J" first="Jun" last="Wu">Jun Wu</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>Centre of Pear Engineering Technology Research, State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University</institution>, Nanjing 210095,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">27305967</idno><idno type="pmc">4910100</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4910100</idno><idno type="RBID">PMC:4910100</idno><idno type="doi">10.1038/srep28130</idno><date when="2016">2016</date><idno type="wicri:Area/Pmc/Corpus">000468</idno><idno type="wicri:Area/Pmc/Curation">000467</idno><idno type="wicri:Area/Pmc/Checkpoint">000204</idno><idno type="wicri:Area/Ncbi/Merge">002067</idno><idno type="wicri:Area/Ncbi/Curation">002067</idno><idno type="wicri:Area/Ncbi/Checkpoint">002067</idno><idno type="wicri:Area/Main/Merge">000249</idno><idno type="wicri:Area/Main/Curation">000249</idno><idno type="wicri:Area/Main/Exploration">000249</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Distinct transcriptome profiles reveal gene expression patterns during fruit development and maturation in five main cultivated species of pear (<italic>Pyrus L.</italic>)</title><author><name sortKey="Zhang, Ming Yue" sort="Zhang, Ming Yue" uniqKey="Zhang M" first="Ming-Yue" last="Zhang">Ming-Yue Zhang</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>Centre of Pear Engineering Technology Research, State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University</institution>, Nanjing 210095,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Xue, Cheng" sort="Xue, Cheng" uniqKey="Xue C" first="Cheng" last="Xue">Cheng Xue</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>Centre of Pear Engineering Technology Research, State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University</institution>, Nanjing 210095,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Xu, Linlin" sort="Xu, Linlin" uniqKey="Xu L" first="Linlin" last="Xu">Linlin Xu</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>Centre of Pear Engineering Technology Research, State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University</institution>, Nanjing 210095,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Sun, Honghe" sort="Sun, Honghe" uniqKey="Sun H" first="Honghe" last="Sun">Honghe Sun</name><affiliation wicri:level="1"><nlm:aff id="a2"><institution>Beijing Academy of Agriculture and Forestry Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (North China)</institution>, Beijing, 100097,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Qin, Meng Fan" sort="Qin, Meng Fan" uniqKey="Qin M" first="Meng-Fan" last="Qin">Meng-Fan Qin</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>Centre of Pear Engineering Technology Research, State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University</institution>, Nanjing 210095,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Zhang, Shaoling" sort="Zhang, Shaoling" uniqKey="Zhang S" first="Shaoling" last="Zhang">Shaoling Zhang</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>Centre of Pear Engineering Technology Research, State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University</institution>, Nanjing 210095,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Wu, Jun" sort="Wu, Jun" uniqKey="Wu J" first="Jun" last="Wu">Jun Wu</name><affiliation wicri:level="1"><nlm:aff id="a1"><institution>Centre of Pear Engineering Technology Research, State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University</institution>, Nanjing 210095,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author></analytic><series><title level="j">Scientific Reports</title><idno type="eISSN">2045-2322</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>The transcriptomes of five pear cultivars, ‘Hosui’ (<italic>P. pyrifolia</italic>), ‘Yali’ (<italic>P. bretschneideri</italic>), ‘Kuerlexiangli’ (<italic>P. sinkiangensis</italic>), ‘Nanguoli’ (<italic>P. ussuriensis</italic>), and ‘Starkrimson’ (<italic>P. communis</italic>) were sequenced at seven key fruit developmental stages, from fruit setting to maturation and fruit senescence after harvesting. In total, 33,136 genes that could be mapped by reads, were analyzed. Most gene expression cluster models showed a steadily decreasing trend. Gene expression patterns had obvious differences according to maturity type, that is, post-ripening cultivars were still vigorous at maturity, and showed a higher proportion of up-regulated genes; non post-ripening cultivars had a gradually decreasing tendency during fruit maturation. Meanwhile, differentially expressed genes related to fruit quality and development, such as stone cells, sugar, acid and hormones, were identified. Co-expression analysis revealed that several ethylene synthesis genes and polyphenoloxidase-related genes interacted with each other directly, and an indirect relationship was reflected between ethylene synthesis genes and ethylene response genes. In addition, the highly diverse SNPs represented the great differences between oriental and occidental pears. Understanding how RNA-seq based gene-expression patterns and differential gene expression contribute to fruit quality allows us to build models for gene-expression for fruit development of <italic>Pyrus</italic> species.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Rom, R C" uniqKey="Rom R">R. C. Rom</name></author><author><name sortKey="Carlson, R F" uniqKey="Carlson R">R. F. Carlson</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Vavilov, N I" uniqKey="Vavilov N">N. I. Vavilov</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kimura, T" uniqKey="Kimura T">T. Kimura</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Cao, Y F" uniqKey="Cao Y">Y.-f. CAO</name></author><author><name sortKey="Tian, L M" uniqKey="Tian L">L.-m. Tian</name></author><author><name sortKey="Li, L L" uniqKey="Li L">L.-l. 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Li</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>République populaire de Chine</li></country></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Zhang, Ming Yue" sort="Zhang, Ming Yue" uniqKey="Zhang M" first="Ming-Yue" last="Zhang">Ming-Yue Zhang</name></noRegion><name sortKey="Qin, Meng Fan" sort="Qin, Meng Fan" uniqKey="Qin M" first="Meng-Fan" last="Qin">Meng-Fan Qin</name><name sortKey="Sun, Honghe" sort="Sun, Honghe" uniqKey="Sun H" first="Honghe" last="Sun">Honghe Sun</name><name sortKey="Wu, Jun" sort="Wu, Jun" uniqKey="Wu J" first="Jun" last="Wu">Jun Wu</name><name sortKey="Xu, Linlin" sort="Xu, Linlin" uniqKey="Xu L" first="Linlin" last="Xu">Linlin Xu</name><name sortKey="Xue, Cheng" sort="Xue, Cheng" uniqKey="Xue C" first="Cheng" last="Xue">Cheng Xue</name><name sortKey="Zhang, Shaoling" sort="Zhang, Shaoling" uniqKey="Zhang S" first="Shaoling" last="Zhang">Shaoling Zhang</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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